Extreme Lab Publicaions

• Sorted by Date • Classified by Publication Type • Classified by Research Category •

Classified by Research Category

• Workflow • Web Service • XML • Multicore • Portal • LEAD • TeraGrid • Grid • HPC • Provenance • CCA • Semi-structured Data •

Please Note: This page contains papers that have at least one author from the Extreme Lab at Indiana University. Many papers are the result of collaborations with researchers at other institutions.

Workflow

• Keith A. Brewster, Daniel B. Weber, Suresh Marru, Kevin W. Thomas, Dennis Gannon, Kelvin Droegemeier, Jay Alameda, and Steven J. Weiss. On-Demand Severe Weather Forecasts Using TeraGrid via the LEAD Portal. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Richard D Clark, Suresh Marru, Marcus Christie, Thomas Baltzer, Kelvin Droegemeier, Everette Joseph, and Brad Illston. The LEAD-WxChallenge Pilot Project: The Potential of Grid-Enabled Learning. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Wei Lu, Thilina Gunarathne, and Dennis Gannon. Developing a Concurrent Service Orchestration Engine in CCR. In International Workshop on Multicore Software Engineering (IWMSE) conjuncted with ICSE, Leipzig, Germany, May 2008.
  BibTeX     Download: (unavailable)
• Srinath Perera, Suresh Marru, and Chathura Herath. Workflow Infrastructure for Multi-scale Science Gateways. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Yiming Sun, Suresh Marru, and Beth Plale. Experience with Bursty Workflow-driven Workloads in LEAD Science Gateway. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Marcus Christie, Suresh Marru, Satoshi Shirasuna, and Aleksander Slominski. Programming Paradigms for Scientific Problem Solving Environments. IFIP International Federation for Information Processing, 239:3–15, Springer, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Marcus Christie, Suresh Marru, Gopi Kandaswamy, Liang Fang, Yi Huang, Sangmi Pallickara, Scott Jensen, Ning Liu, Satoshi Shirasuna, Yogesh Simmhan, Aleksander Slominski, Rahul Ramachandran, Rich Clark, Katherine Lawrence, and Il-Hwan Kim. The LEAD Science Portal Problem Solving Environment. 23rd Conference on IIPS, 2007.
  BibTeX     Download: (unavailable)
• Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen, Ning Liu, Suresh Marru, Sangmi Pallickara, Srinath Perera, and Satoshi Shirasuna. Building Grid Portals for e-Science: A Service Oriented Architecture. High Performance Computing and Grids in Action, IOS Press, Amsterdam, 2007.
  BibTeX     Download: [pdf] 
• Wei Lu, Kenneth Chiu, Satoshi Shirasuna, and Dennis Gannon. A Hybrid Decomposition Scheme for Building Scientific Workflows. In HPC'07 (Proceedings of High Performance Computing Symposium, SCS Spring Simulation Multiconference, Norfolk, VA, March 2007.
  BibTeX     Download: (unavailable)
• Dennis Gannon, Beth Plale, Suresh Marru, Gopi Kandaswamy, Yogesh Simmhan, and Satoshi Shirasuna. Chapter 10: Dynamic, adaptive workflows for mesoscale meteorology. Workflows for E-Science: Scientific Workflows for Grids, pp. 97–114, Springer-Verlag New York Inc, 2006.
  BibTeX     Download: (unavailable)
• Gopi Kandaswamy, Liang Fang, Yi Huang, Yogesh Simmhan, Satoshi Shirasuna, Suresh Marru, and Dennis Gannon. Building web services for scientific grid applications. IBM Journal of Research and Development, 50(2/3):249–260, IBM Corp. Riverton, NJ, USA, 2006.
  BibTeX     Download: [pdf] 
• Srinath Perera and Dennis Gannon. Web Service Extensions for Scientifi Workflows. In HPDC2006 Workshop on Workflows in Support of Large-Scale Science (WORKS06), Paris, France, June 2006.
  BibTeX     Download: [pdf] 
• Yogesh Simmhan, Beth Plale, Dennis Gannon, and Suresh Marru. Performance Evaluation of the Karma Provenance Framework for Scientific Workflows. International Provenance and Annotation Workshop (IPAW), 4145, Springer, 2006.
  BibTeX     Download: [pdf] 
• Yogesh L. Simmhan, Beth Plale, and Dennis Gannon. Towards a Quality Model for Effective Data Selection in Collaboratories. In IEEE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow) in conjunction with ICDE, April 2006.
  BibTeX     Download: [pdf] 
• Gopi Kandaswamy, Liang Fang, Yi Huang, Satoshi Shirasuna, and Dennis Gannon. A Generic Framework for Building Services and Scientific Workflows for the Grid. Technical Report Indiana University, 2005.
  BibTeX     Download: [pdf] 
• Yogesh L. Simmhan, Beth Plale, and Dennis Gannon. A Survey of Data Provenance in e-Science. SIGMOD Record, 34(3), September 2005.
  BibTeX     Download: [pdf] 

Web Service

• Dennis Gannon, Marcus Christie, Suresh Marru, Satoshi Shirasuna, and Aleksander Slominski. Programming Paradigms for Scientific Problem Solving Environments. IFIP International Federation for Information Processing, 239:3–15, Springer, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen, Ning Liu, Suresh Marru, Sangmi Pallickara, Srinath Perera, and Satoshi Shirasuna. Building Grid Portals for e-Science: A Service Oriented Architecture. High Performance Computing and Grids in Action, IOS Press, Amsterdam, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Suresh Marru, Gopi Kandaswamy, Yogesh Simmhan, and Satoshi Shirasuna. Chapter 10: Dynamic, adaptive workflows for mesoscale meteorology. Workflows for E-Science: Scientific Workflows for Grids, pp. 97–114, Springer-Verlag New York Inc, 2006.
  BibTeX     Download: (unavailable)
• Gopi Kandaswamy, Liang Fang, Yi Huang, Yogesh Simmhan, Satoshi Shirasuna, Suresh Marru, and Dennis Gannon. Building web services for scientific grid applications. IBM Journal of Research and Development, 50(2/3):249–260, IBM Corp. Riverton, NJ, USA, 2006.
  BibTeX     Download: [pdf] 
• Yogesh Simmhan, Beth Plale, Dennis Gannon, and Suresh Marru. Performance Evaluation of the Karma Provenance Framework for Scientific Workflows. International Provenance and Annotation Workshop (IPAW), 4145, Springer, 2006.
  BibTeX     Download: [pdf] 
• Kenneth Chiu, Tharaka Devadithya, Wei Lu, and Aleksander Slominski. A Binary XML for Scientific Applications. In e-Science 2005, 2005.
  BibTeX     Download: [pdf] 
• Liang Fang, Dennis Gannon, and Frank Siebenlist. XPOLA: An Extensible Capability-based Authorization Infrastructure for Grids. In 4th Annual PKI R&D Workshop, April 2005.
  BibTeX     Download: [pdf] 
• Liang Fang, Aleksander Slominski, and Dennis Gannon. Web Services Security and Load Balancing in Grid Environment. Technical Report Indiana University, 2005.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Marcus Christie, Liang Fang, Yi Huang, Scott Jensen, Gopi Kandaswamy, Suresh Marru, Sangmi L. Pallickara, Satoshi Shirasuna, Yogesh Simmhan, Aleksander Slominski, and Yiming Sun. Service Oriented Architectures for Science Gateways on Grid Systems. In International Conference on Service Oriented Computing (ICSOC), Springer, 2005.
  BibTeX     Download: [pdf] 
• Gopi Kandaswamy, Liang Fang, Yi Huang, Satoshi Shirasuna, and Dennis Gannon. A Generic Framework for Building Services and Scientific Workflows for the Grid. Technical Report Indiana University, 2005.
  BibTeX     Download: [pdf] 
• Wei Lu, Kenneth Chiu, Aleksander Slominski, and Dennis Gannon. A Streaming Validation Model for SOAP Digital Signature. In The 14th IEEE International Symposium on High Performance Distributed Computing (HPDC-14), 2005.
  BibTeX     Download: [pdf] 
• Aleksander Slominski, Alexandre di Costanzo, Dennis Gannon, and Denis Caromel. Asynchronous Peer-to-PeerWeb Services and Firewalls. In 7th International Workshop on Java for Parallel and Distributed Programming (IPDPS 2005), April 2005. Accepted
  BibTeX     Download: [pdf] 
• Aleksander Slominski, Madhusudhan Govindaraju, Michael R. Head, Kenneth Chiu, Michael J. Lewis, Robert van Engelen, Pu Liu, and Nayef Abu-Ghazaleh. A Benchmark Suite for SOAP-based Communication in Grid Web Services. In Proceedings of SC|05 (Supercomputing): International Conference for High Performance Computing, Networking, and Storage, Seattle WA, November, 2005.
  BibTeX     Download: [pdf] 
• Liang Fang, Samuel Meder, Olivier Chevassut, and Frank Siebenlist. Secure Password-Based Authenticated Key Exchange for Web Services. In 2004 ACM Workshop on Secure Web Services on CCS-11, October 2004.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Sriram Krishnan, Aleksander Slominski, Gopi Kandaswamy, and Liang Fang. Building Applications from a Web Service based Component Architecture. In ICS 2004 Workshop on Component Models and Systems for Grid Applications, Kluwer Academic, 2004.
  BibTeX     Download: [pdf] 
• Madhusudhan Govindaraju, Aleksander Slominski, Kenneth Chiu, Pu Liu, Robert van Engelen, and Michael J. Lewis. Toward Characterizing the Performance of SOAP Toolkits. In 5th IEEE/ACM International Workshop on Grid Computing, November 2004.
  BibTeX     Download: [pdf] 
• Satoshi Shirasuna, Aleksander Slominski, Liang Fang, and Dennis Gannon. Performance Comparison of Security Mechanisms for Grid Services. August 2004. Full version
  BibTeX     Download: [pdf] 
• Satoshi Shirasuna, Aleksander Slominski, Liang Fang, and Dennis Gannon. Performance Comparison of Security Mechanisms for Grid Services. In 5th IEEE/ACM International Workshop on Grid Computing, November 2004.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Rachana Ananthakrishnan, Sriram Krishnan, Madhusudhan Govindaraju, Lavanya Ramakrishnan, and Aleksander Slominski. Grid Web Services and Application Factories, Wiley, 2003.
  BibTeX     Download: [pdf] 
• Kenneth Chiu, Madhusudhan Govindaraju, and Randall Bramley. Investigating the Limits of SOAP Performance for Scientific Computing. In The 11-th IEEE International Symposium on High Performance Distributed Computing HPDC--11 2002 (HPDC'02), Jul 2002.
  BibTeX     Download: [pdf] 
• Aleksander Slominski, Madhusudhan Govindaraju, Dennis Gannon, and Randall Bramley. Design of an XML based Interoperable RMI System: SoapRMI C++/Java 1.1. In Proceedings of the 2001 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV, Jun 2001.
  BibTeX     Download: (unavailable)

XML

• Tharaka Devadithya, Zongde Liu, Nayef Abu-Ghazaleh, Wei Lu, Kenneth Chiu, and Stephane Ethier. BXSA for Fast Processing of Scientific Data. In HPC'07 (Proceedings of High Performance Computing Symposium, SCS Spring Simulation Multiconference), Norfolk, VA, March 2007.
  BibTeX     Download: (unavailable)
• Wei Lu and Dennis Gannon. Parallel XML Processing by Work Stealing. In Workshop on Service Oriented Computing Performance In Conjunction with HPDC, Monterey Bay California, June 2007.
  BibTeX     Download: [pdf] 
• Yinfei Pan, Wei Lu, Ying Zhang, and Kenneth Chiu. A Static Load-Balancing Scheme for Parallel XML Parsing on Multicore CPUs. In IEEE International Symposium on Cluster Computing and the Grid, Rio de Janeiro, 2007.
  BibTeX     Download: (unavailable)
• Yinfei Pan, Ying Zhang, Kenneth Chiu, and Wei Lu. Parallel XML Parsing Using Meta-DFAs. In 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, December 2007.
  BibTeX     Download: (unavailable)
• Wei Lu, Kenneth Chiu, and Dennis Gannon. Building a Generic SOAP Framework over Binary XML. In The 15th IEEE International Symposium on High Performance Distributed Computing (HPDC-15), June 2006.
  BibTeX     Download: [pdf] 
• Wei Lu, Kenneth Chiu, and Yinfei Pan. A Parallel Approach to XML Parsing. In The 7th IEEE/ACM International Conference on Grid Computing, Septemer 2006.
  BibTeX     Download: [pdf] 
• Kenneth Chiu and Wei Lu. A Compiler-Based Approach to Schema-Specific XML Parsing. In First International Worksop on High Performance XML Processing(Satellite of WWW2004), 2004.
  BibTeX     Download: [pdf] 
• Aleksander Slominski, Madhusudhan Govindaraju, Dennis Gannon, and Randall Bramley. Design of an XML based Interoperable RMI System: SoapRMI C++/Java 1.1. In Proceedings of the 2001 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, NV, Jun 2001.
  BibTeX     Download: (unavailable)

Multicore

• Wei Lu, Thilina Gunarathne, and Dennis Gannon. Developing a Concurrent Service Orchestration Engine in CCR. In International Workshop on Multicore Software Engineering (IWMSE) conjuncted with ICSE, Leipzig, Germany, May 2008.
  BibTeX     Download: (unavailable)
• Wei Lu and Dennis Gannon. Parallel XML Processing by Work Stealing. In Workshop on Service Oriented Computing Performance In Conjunction with HPDC, Monterey Bay California, June 2007.
  BibTeX     Download: [pdf] 
• Yinfei Pan, Wei Lu, Ying Zhang, and Kenneth Chiu. A Static Load-Balancing Scheme for Parallel XML Parsing on Multicore CPUs. In IEEE International Symposium on Cluster Computing and the Grid, Rio de Janeiro, 2007.
  BibTeX     Download: (unavailable)
• Yinfei Pan, Ying Zhang, Kenneth Chiu, and Wei Lu. Parallel XML Parsing Using Meta-DFAs. In 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, December 2007.
  BibTeX     Download: (unavailable)
• Wei Lu, Kenneth Chiu, and Yinfei Pan. A Parallel Approach to XML Parsing. In The 7th IEEE/ACM International Conference on Grid Computing, Septemer 2006.
  BibTeX     Download: [pdf] 

Portal

• Keith A. Brewster, Daniel B. Weber, Suresh Marru, Kevin W. Thomas, Dennis Gannon, Kelvin Droegemeier, Jay Alameda, and Steven J. Weiss. On-Demand Severe Weather Forecasts Using TeraGrid via the LEAD Portal. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Keith A. Brewster, Daniel B. Weber, Kevin W. Thomas, Kelvin K. Droegemeier, Yunheng Wang, Ming Xue, Suresh Marru, Dennis Gannon, Jay Alameda, Brian F. Jewett, Jack S. Kain, Steven J. Weiss, and Marcus Christie. Use of the LEAD Portal for On-Demand Severe Weather Prediction. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Richard D Clark, Suresh Marru, Marcus Christie, Thomas Baltzer, Kelvin Droegemeier, Everette Joseph, and Brad Illston. The LEAD-WxChallenge Pilot Project: The Potential of Grid-Enabled Learning. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Richard D. Clark, Suresh Marru, Marcus Christie, Dennis Gannon, Brad Illston, Thomas Baltzer, and Kelvin K. Droegemeier. The LEAD-WxChallenge pilot project: enabling the community. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Kelvin K. Droegemeier, Jay Alameda, Legand Burge, Keith Brewster, Chandrasekar V., Marcus Christie, Richard Clark, Ben Domenico, Dennis Gannon, Sara Graves, Everette Joseph, Suresh Marru, Beth Plale, Rahul Ramachandran, Mohan Ramamurthy, Daniel Reed, John Rushing, Al Rossi, Steve Tanner, Kevin W. Thomas, Daniel Weber, Robert Wilhelmson, Anne Wilson, and Ming Xueand Sepideh Yalda. Linked Environments for Atmospheric Discovery (LEAD): Web services for meteorological research and education. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Suresh Marru, Dennis Gannon, Suman Nadella, Pete Beckman, Daniel Weber, Keith Brewster, and Kelvin Droegemeier. LEAD Cyberinfrastructure to Track Real-Time Storms Using SPRUCE Urgent Computing. CTWatch Quarterly, Volume 4:5 – 16, March 2008.
  BibTeX     Download: [pdf] 
• Tom Baltzer, Anne Wilson, Mohan Ramamurthy, Suresh Marru, Marcus Christie, Dennis Gannon, Al Rossi, Shawn Hampton, Jay Alameda, and Kelvin Droegemeier. LEAD at the Unidata workshop: demonstrating democratization of NWP capabilities. 23rd Conference on IIPS, 2007.
  BibTeX     Download: [pdf] 
• Marcus Christie and Suresh Marru. The LEAD Portal: a TeraGrid gateway and application service architecture: Research Articles. Concurr. Comput. : Pract. Exper., 19(6):767–781, John Wiley and Sons Ltd., Chichester, UK, 2007.
  BibTeX     Download: [pdf] [ps.gz] [ps] [HTML] 
• Dennis Gannon, Beth Plale, Marcus Christie, Suresh Marru, Gopi Kandaswamy, Liang Fang, Yi Huang, Sangmi Pallickara, Scott Jensen, Ning Liu, Satoshi Shirasuna, Yogesh Simmhan, Aleksander Slominski, Rahul Ramachandran, Rich Clark, Katherine Lawrence, and Il-Hwan Kim. The LEAD Science Portal Problem Solving Environment. 23rd Conference on IIPS, 2007.
  BibTeX     Download: (unavailable)
• Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen, Ning Liu, Suresh Marru, Sangmi Pallickara, Srinath Perera, and Satoshi Shirasuna. Building Grid Portals for e-Science: A Service Oriented Architecture. High Performance Computing and Grids in Action, IOS Press, Amsterdam, 2007.
  BibTeX     Download: [pdf] 

LEAD

• Keith A. Brewster, Daniel B. Weber, Suresh Marru, Kevin W. Thomas, Dennis Gannon, Kelvin Droegemeier, Jay Alameda, and Steven J. Weiss. On-Demand Severe Weather Forecasts Using TeraGrid via the LEAD Portal. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Keith A. Brewster, Daniel B. Weber, Kevin W. Thomas, Kelvin K. Droegemeier, Yunheng Wang, Ming Xue, Suresh Marru, Dennis Gannon, Jay Alameda, Brian F. Jewett, Jack S. Kain, Steven J. Weiss, and Marcus Christie. Use of the LEAD Portal for On-Demand Severe Weather Prediction. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Richard D Clark, Suresh Marru, Marcus Christie, Thomas Baltzer, Kelvin Droegemeier, Everette Joseph, and Brad Illston. The LEAD-WxChallenge Pilot Project: The Potential of Grid-Enabled Learning. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Richard D. Clark, Suresh Marru, Marcus Christie, Dennis Gannon, Brad Illston, Thomas Baltzer, and Kelvin K. Droegemeier. The LEAD-WxChallenge pilot project: enabling the community. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Kelvin K. Droegemeier, Jay Alameda, Legand Burge, Keith Brewster, Chandrasekar V., Marcus Christie, Richard Clark, Ben Domenico, Dennis Gannon, Sara Graves, Everette Joseph, Suresh Marru, Beth Plale, Rahul Ramachandran, Mohan Ramamurthy, Daniel Reed, John Rushing, Al Rossi, Steve Tanner, Kevin W. Thomas, Daniel Weber, Robert Wilhelmson, Anne Wilson, and Ming Xueand Sepideh Yalda. Linked Environments for Atmospheric Discovery (LEAD): Web services for meteorological research and education. 24th Conference on IIPS, 2008.
  BibTeX     Download: [pdf] 
• Dan Fraser, Suresh Marru, Stuart Martin, Nancy Wilkins Diehr, Ian Foster, Srinath Perera, and Gateway Debug Team. Engaging with the LEAD Science Gateway Project: Lessons Learned in Successfully Deploying Complex System Solutions on TeraGrid. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Suresh Marru, Srinath Perera, Martin Feller, and Stuart Martin. Reliable and Scalable Job Submission: LEAD Science GatewayÕs Testing and Experiences with WS GRAM on TeraGrid Resources . TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Suresh Marru, Dennis Gannon, Suman Nadella, Pete Beckman, Daniel Weber, Keith Brewster, and Kelvin Droegemeier. LEAD Cyberinfrastructure to Track Real-Time Storms Using SPRUCE Urgent Computing. CTWatch Quarterly, Volume 4:5 – 16, March 2008.
  BibTeX     Download: [pdf] 
• Srinath Perera, Suresh Marru, and Chathura Herath. Workflow Infrastructure for Multi-scale Science Gateways. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Yiming Sun, Suresh Marru, and Beth Plale. Experience with Bursty Workflow-driven Workloads in LEAD Science Gateway. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Tom Baltzer, Anne Wilson, Mohan Ramamurthy, Suresh Marru, Marcus Christie, Dennis Gannon, Al Rossi, Shawn Hampton, Jay Alameda, and Kelvin Droegemeier. LEAD at the Unidata workshop: demonstrating democratization of NWP capabilities. 23rd Conference on IIPS, 2007.
  BibTeX     Download: [pdf] 
• Marcus Christie and Suresh Marru. The LEAD Portal: a TeraGrid gateway and application service architecture: Research Articles. Concurr. Comput. : Pract. Exper., 19(6):767–781, John Wiley and Sons Ltd., Chichester, UK, 2007.
  BibTeX     Download: [pdf] [ps.gz] [ps] [HTML] 
• Dennis Gannon, Beth Plale, Marcus Christie, Suresh Marru, Gopi Kandaswamy, Liang Fang, Yi Huang, Sangmi Pallickara, Scott Jensen, Ning Liu, Satoshi Shirasuna, Yogesh Simmhan, Aleksander Slominski, Rahul Ramachandran, Rich Clark, Katherine Lawrence, and Il-Hwan Kim. The LEAD Science Portal Problem Solving Environment. 23rd Conference on IIPS, 2007.
  BibTeX     Download: (unavailable)
• Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen, Ning Liu, Suresh Marru, Sangmi Pallickara, Srinath Perera, and Satoshi Shirasuna. Building Grid Portals for e-Science: A Service Oriented Architecture. High Performance Computing and Grids in Action, IOS Press, Amsterdam, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Suresh Marru, Gopi Kandaswamy, Yogesh Simmhan, and Satoshi Shirasuna. Chapter 10: Dynamic, adaptive workflows for mesoscale meteorology. Workflows for E-Science: Scientific Workflows for Grids, pp. 97–114, Springer-Verlag New York Inc, 2006.
  BibTeX     Download: (unavailable)
• Gopi Kandaswamy, Liang Fang, Yi Huang, Yogesh Simmhan, Satoshi Shirasuna, Suresh Marru, and Dennis Gannon. Building web services for scientific grid applications. IBM Journal of Research and Development, 50(2/3):249–260, IBM Corp. Riverton, NJ, USA, 2006.
  BibTeX     Download: [pdf] 
• Beth Plale, Dennis Gannon, Yi Huang, Gopi Kandaswamy, Sangmi Pallickara, and Aleksander Slominski. Cooperating Services for Managing Data Driven Computational Experimentation. Computing in Science and Engineering, 7(5), 2005.
  BibTeX     Download: [pdf] 
• K.K. Droegemeier, V. Chandrasekar, R. Clark, D. Gannon, S. Graves, E. Joseph, M. Ramamurthy, R. Wilhelmson, K. Brewster, B. Domenico, and others. Linked environments for atmospheric discovery (LEAD): A cyberinfrastructure for mesoscale meteorology research and education. 20th Conf. on Interactive Information Processing Systems for Meteorology, Oceanography, and Hydrology, 2004.
  BibTeX     Download: (unavailable)

TeraGrid

• Keith A. Brewster, Daniel B. Weber, Suresh Marru, Kevin W. Thomas, Dennis Gannon, Kelvin Droegemeier, Jay Alameda, and Steven J. Weiss. On-Demand Severe Weather Forecasts Using TeraGrid via the LEAD Portal. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Richard D Clark, Suresh Marru, Marcus Christie, Thomas Baltzer, Kelvin Droegemeier, Everette Joseph, and Brad Illston. The LEAD-WxChallenge Pilot Project: The Potential of Grid-Enabled Learning. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Dan Fraser, Suresh Marru, Stuart Martin, Nancy Wilkins Diehr, Ian Foster, Srinath Perera, and Gateway Debug Team. Engaging with the LEAD Science Gateway Project: Lessons Learned in Successfully Deploying Complex System Solutions on TeraGrid. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Suresh Marru, Srinath Perera, Martin Feller, and Stuart Martin. Reliable and Scalable Job Submission: LEAD Science GatewayÕs Testing and Experiences with WS GRAM on TeraGrid Resources . TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Yiming Sun, Suresh Marru, and Beth Plale. Experience with Bursty Workflow-driven Workloads in LEAD Science Gateway. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 

Grid

• Dan Fraser, Suresh Marru, Stuart Martin, Nancy Wilkins Diehr, Ian Foster, Srinath Perera, and Gateway Debug Team. Engaging with the LEAD Science Gateway Project: Lessons Learned in Successfully Deploying Complex System Solutions on TeraGrid. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Suresh Marru, Srinath Perera, Martin Feller, and Stuart Martin. Reliable and Scalable Job Submission: LEAD Science GatewayÕs Testing and Experiences with WS GRAM on TeraGrid Resources . TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Srinath Perera, Suresh Marru, and Chathura Herath. Workflow Infrastructure for Multi-scale Science Gateways. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Yiming Sun, Suresh Marru, and Beth Plale. Experience with Bursty Workflow-driven Workloads in LEAD Science Gateway. TeraGrid Conference, June 2008.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Marcus Christie, Suresh Marru, Satoshi Shirasuna, and Aleksander Slominski. Programming Paradigms for Scientific Problem Solving Environments. IFIP International Federation for Information Processing, 239:3–15, Springer, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Marcus Christie, Yi Huang, Scott Jensen, Ning Liu, Suresh Marru, Sangmi Pallickara, Srinath Perera, and Satoshi Shirasuna. Building Grid Portals for e-Science: A Service Oriented Architecture. High Performance Computing and Grids in Action, IOS Press, Amsterdam, 2007.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Beth Plale, Suresh Marru, Gopi Kandaswamy, Yogesh Simmhan, and Satoshi Shirasuna. Chapter 10: Dynamic, adaptive workflows for mesoscale meteorology. Workflows for E-Science: Scientific Workflows for Grids, pp. 97–114, Springer-Verlag New York Inc, 2006.
  BibTeX     Download: (unavailable)
• Gopi Kandaswamy, Liang Fang, Yi Huang, Yogesh Simmhan, Satoshi Shirasuna, Suresh Marru, and Dennis Gannon. Building web services for scientific grid applications. IBM Journal of Research and Development, 50(2/3):249–260, IBM Corp. Riverton, NJ, USA, 2006.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Jay Alameda, Octav Chipara, Marcus Christie, Vinayak Dukle, Liang Fang, Matthew Farellee, Geoffrey Fox, Shawn Hampton, Gopi Kandaswamy, Deepti Kodeboyina, Charlie Moad, Marlon Pierce, Beth Plale, Albert Rossi, Yogesh Simmhan, Anuraag Sarangi, Aleksander Slominski, Satoshi Shirasauna, and Thomas Thomas. Building Grid Portal Applications from a Web-Service Component Architecture. Proceedings of the IEEE (Special issue on Grid Computing), 93(3):551–563, March 2005.
  BibTeX     Download: (unavailable)
• Dennis Gannon, Beth Plale, Marcus Christie, Liang Fang, Yi Huang, Scott Jensen, Gopi Kandaswamy, Suresh Marru, Sangmi L. Pallickara, Satoshi Shirasuna, Yogesh Simmhan, Aleksander Slominski, and Yiming Sun. Service Oriented Architectures for Science Gateways on Grid Systems. In International Conference on Service Oriented Computing (ICSOC), Springer, 2005.
  BibTeX     Download: [pdf] 
• Beth Plale, Dennis Gannon, Yi Huang, Gopi Kandaswamy, Sangmi Pallickara, and Aleksander Slominski. Cooperating Services for Managing Data Driven Computational Experimentation. Computing in Science and Engineering, 7(5), 2005.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Sriram Krishnan, Liang Fang, Gopi Kandaswamy, Yogesh Simmhan, and Aleksander Slominski. On Building Parallel and Grid Applications: Component Technology and Distributed Services. In CLADE 2004, Challenges of Large Applications in Distributed Environments, IEEE Computer Society Press, 2004.
  BibTeX     Download: [pdf] 
• Sriram Krishnan and Dennis Gannon. XCAT3: A Framework for CCA Components as OGSA Services. In HIPS 2004, 9th International Workshop on High-Level Parallel Programming Models and Supportive Environments, IEEE Computer Society Press, 2004.
  BibTeX     Download: [pdf] 
• Sriram Krishnan and Dennis Gannon. Checkpoint and Restart for Distributed Components in XCAT3. In Grid 2004, 5th IEEE/ACM International Workshop on Grid Computing, IEEE Computer Society Press, November 2004.
  BibTeX     Download: [pdf] 
• Dennis Gannon, Rachana Ananthakrishnan, Sriram Krishnan, Madhusudhan Govindaraju, Lavanya Ramakrishnan, and Aleksander Slominski. Grid Web Services and Application Factories, Wiley, 2003.
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• Dennis Gannon, Marcus Christie, Octav Chipara, Liang Fang, Matthew Farrellee, Gopi Kandaswamy, Wei Lu, Beth Plale, Aleksander Slominski, Anuraag Sarangi, and Yogesh L. Simmhan. Building Grid Services for User Portals. In GGF Workshop on Designing and Building Grid Services, Chicago, 2003.
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• Dennis Gannon, Randall Bramley, Geoffrey Fox, Shava Smallen, Al Rossi, Rachana Ananthakrishnan, Felipe Bertrand, Ken Chiu, Matt Farrellee, Madhu Govindaraju, Sriram Krishnan, Lavanya Ramakrishnan, Yogesh Simmhan, Alek Slominski, Yu Ma, Caroline Olariu, and Nicolas Rey-Cenvaz. Programming the Grid: Distributed Software Components, P2P and Grid Web Services for Scientific Applications. In Special Issue on Grid Computing, Journal of Cluster Computing, pp. 325–336, 5(2002) No. 3, Kluwer Academic Publishers, 2002.
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• Lavanya Ramakrishnan, Helen Nell Rehn, Jay Alameda, Rachana Ananthakrishnan, Madhusudhan Govindaraju, Aleksander Slominski, Kay Connelly, Von Welch, Dennis Gannon, Randall Bramley, and Shawn Hampton. An Authorization Framework for a Grid Based Common Component Architecture. In Proceedings of the 3rd International Workshop on Grid Computing, Baltimore, Maryland, pp. 169–180, Springer Press, 2002.
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HPC

• Tharaka Devadithya and Kenneth Chiu. Fast Binary Serialization for Grid Systems with XBS. In PDSC2007 (Proceedings of Parallel and Distributed Computing and Systems), Cambridge, MA, November 2007.
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• Tharaka Devadithya, Kenneth Chiu, and Wei Lu. C++ Reflection for High Performance Problem Solving Environment. In HPC'07 (Proceedings of High Performance Computing Symposium, SCS Spring Simulation Multiconference), Norfolk, VA, March 2007.
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• Wei Lu, Kenneth Chiu, and Dennis Gannon. Building a Generic SOAP Framework over Binary XML. In The 15th IEEE International Symposium on High Performance Distributed Computing (HPDC-15), June 2006.
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• Kenneth Chiu, Tharaka Devadithya, Wei Lu, and Aleksander Slominski. A Binary XML for Scientific Applications. In e-Science 2005, 2005.
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• Kenneth Chiu. XBS: A Streaming Binary Serializer for High Performance Computing. In Proceedings of the High Performance Computing Symposium 2004, Society for Computer Simulation International, 2004.
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• Kenneth Chiu, Madhusudhan Govindaraju, and Dennis Gannon. The Proteus Multiprotocol Library. In Proceedings of SuperComputing Conference, Baltimore, Maryland, 2002.
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• Kenneth Chiu, Madhusudhan Govindaraju, and Dennis Gannon. The Proteus multiprotocol message library. In Proceedings of the 2002 ACM/IEEE Conference on Supercomputing, pp. 1–9, IEEE Computer Society Press, Baltimore, Maryland, 2002.
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• Kenneth Chiu, Madhusudhan Govindaraju, and Randall Bramley. Investigating the Limits of SOAP Performance for Scientific Computing. In The 11-th IEEE International Symposium on High Performance Distributed Computing HPDC--11 2002 (HPDC'02), Jul 2002.
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• Jill Dahlburg, James Corones, Donald Batchelor, Randall Bramley, Martin Greenwald, Stephen Jardin, Sergei Krasheninnikov, Alan Laub, Jean-Noel Leboeuf, John Lindl, William Lokke, Marshall Rosenbluth, David Ross, and and Dalton Schnack. Fusion Simulation Project: Integrated Simulation and Optimization of Magnetic Fusion Systems. Journal of Fusion Energy, 20(4):135–196, December 2002.
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• Madhusudhan Govindaraju, Aleksander Slominski, Venkatash Choppella, Randall Bramley, and Dennis Gannon. Requirements for and Evaluation of RMI Protocols for Scientific Computing. In Proceedings of SC00 Conference, Dallas TX, nov 2000. Available on CD-ROM from IEEE
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Provenance

• Yogesh Simmhan, Beth Plale, Dennis Gannon, and Suresh Marru. Performance Evaluation of the Karma Provenance Framework for Scientific Workflows. International Provenance and Annotation Workshop (IPAW), 4145, Springer, 2006.
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• Yogesh L. Simmhan, Beth Plale, and Dennis Gannon. A Survey of Data Provenance in e-Science. SIGMOD Record, 34(3), September 2005.
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• Yogesh L. Simmhan, Beth Plale, and Dennis Gannon. A Survey of Data Provenance Techniques. Technical Report TR-618, Computer Science Department, Indiana University, Bloomington, 2005. Shorter version to appear in SIGMOD Record, September 2005
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CCA

• Fang Liu and Randall Bramley. CCA-LISI: On Designing a CCA parallel sparse linear solver interface. In Proc. 21th Int'l Parallel & Distributed Processing Symp.(IPDPS), ACM/IEEE Computer Society, Long Beach, CA, 2007.
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• Wei Lu, Kenneth Chiu, Satoshi Shirasuna, and Dennis Gannon. A Hybrid Decomposition Scheme for Building Scientific Workflows. In HPC'07 (Proceedings of High Performance Computing Symposium, SCS Spring Simulation Multiconference, Norfolk, VA, March 2007.
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• Masha Sosonkina, Fang Liu, and Randall Bramley. Usability Levels for Sparse Linear Algebra Components. Concurrency and Computation: Practice and Experience, in press, 2007.
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• Felipe Bertrand, David E. Bernholdt, Randall Bramley, Kostadin B. Damevski, James A. Kohl, Jay W. Larson, and Alan Sussman. Data Redistribution and Remote Method Invocation in Parallel Component Architectures. In Proceedings of the 19th International Parallel and Distributed Processing Symposium: IPDPS 2005, 2005. Best Paper Award
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• Felipe Bertrand and Randall Bramley. DCA: A Distributed CCA Framework Based on MPI. In 9th International Workshop on High-Level Parallel Programming Models and Supportive Environments, Santa Fe, NM, Apr 2004.
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• Dennis Gannon, Sriram Krishnan, Aleksander Slominski, Gopi Kandaswamy, and Liang Fang. Building Applications from a Web Service based Component Architecture. In ICS 2004 Workshop on Component Models and Systems for Grid Applications, Kluwer Academic, 2004.
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• Sriram Krishnan and Dennis Gannon. XCAT3: A Framework for CCA Components as OGSA Services. In HIPS 2004, 9th International Workshop on High-Level Parallel Programming Models and Supportive Environments, IEEE Computer Society Press, 2004.
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• Sriram Krishnan and Dennis Gannon. Checkpoint and Restart for Distributed Components in XCAT3. In Grid 2004, 5th IEEE/ACM International Workshop on Grid Computing, IEEE Computer Society Press, November 2004.
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• Felipe Bertrand, Yongquan Yuan, Kenneth Chiu, and Randall Bramley. An Approach to Parallel MxN Communication. In Proceedings of the Los Alamos Computer Science Institute (LACSI) Symposium, Santa Fe, NM, October 2003.
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• Madhusudhan Govindaraju, Sriram Krishnan, Kenneth Chiu, Aleksander Slominski, Dennis Gannon, and Randall Bramley. Merging the CCA Component Model with the OGSI Framework. In Proceedings of CCGrid2003, 3rd International Symposium on Cluster Computing and the Grid, Tokyo, Japan, pp. 182–189, 2003.
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• Madhusudhan Govindaraju, Sriram Krishnan, Kenneth Chiu, Aleksander Slominski, Dennis Gannon, and Randall Bramley. XCAT 2.0: Design and Implementation of Component based Web Services. Technical Report TR562, Department of Computer Science, Indiana University, Bloomington, 2002.
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• Sriram Krishnan, Randall Bramley, Dennis Gannon, Rachana Ananthakrishnan, Madhusudhan Govindaraju, Aleksander Slominski, Yogesh Simmhan, Jay Alameda, Richard Alkire, Timothy Drews, and Eric Webb. The XCAT Science Portal. In Scientific Programming, pp. 303–317, 10(4), 2002.
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• Lavanya Ramakrishnan, Helen Nell Rehn, Jay Alameda, Rachana Ananthakrishnan, Madhusudhan Govindaraju, Aleksander Slominski, Kay Connelly, Von Welch, Dennis Gannon, Randall Bramley, and Shawn Hampton. An Authorization Framework for a Grid Based Common Component Architecture. In Proceedings of the 3rd International Workshop on Grid Computing, Baltimore, Maryland, pp. 169–180, Springer Press, 2002.
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• Sriram Krishnan, Randall Bramley, Dennis Gannon, Madhusudhan Govindaraju, Rahul Indurkar, Aleksander Slominski, Benjamin Temko, Richard Alkire, Timothy Drews, Eric Webb, and Jay Alameda. The XCAT Science Portal. In Proceedings of SuperComputing Conference, Denver, Colorado, pp. 49, 2001.
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• Randall Bramley, Kenneth Chiu, Shridhar Diwan, Dennis Gannon, Madhusudhan Govindaraju, Nirmal Mukhi, Benjamin Temko, and Madhuri Yechuri. A Component Based Services Architecture for Building Distributed Applications. In Proceedings of Ninth IEEE International Symposium on High Performance Distributed Computing, Pittsburgh, Pennsylvania, pp. 51–59, IEEE Computer Society Press, 2000.
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Semi-structured Data

• Tharaka Devadithya and Kenneth Chiu. Index Structures for efficient querying with Distributed Triplestores. In e-Science 2007 (Proceedings of Third IEEE International Conference on e-Science and Grid Computing), Bangalore, India, December 2007.
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